Showing : gene expression • reset
7
votes
13
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2.3k
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Test whether expression levels of two gene sets are significantly different
R DESeq2 gene set testing gene expression
7.5 years ago Jon Bråte ▴ 250
3
votes
11
replies
2.4k
views
Filtering Gene Symbols and Sample Description from GSE files of GEO
gene expression geoquery GSE bioconductor microarray
updated 5.8 years ago by 21k • written 5.8 years ago by ▴ 20
0
votes
7
replies
1.3k
views
How to read Illumina data used in the MACQ project (GSE5350)
microarray normalization Illumina data MACQ project gene expression
updated 5.1 years ago by 50k • written 5.1 years ago by • 0
9
votes
6
replies
1.8k
views
Representative gene expression value in one condition with several replicates
rnaseq gene expression edger
updated 6.4 years ago by 50k • written 6.4 years ago by • 0
0
votes
5
replies
2.0k
views
Getting opposite log2 fold change
deseq2 gene expression log2foldchange R
updated 5.2 years ago by 42k • written 5.2 years ago by • 0
0
votes
4
replies
1.3k
views
limma. After running a differential expression analysis... Can you get the individual gene expression levels between individual contrasts for each of…
limma gene expression differential gene expression
6.5 years ago arfranco ▴ 130
3
votes
4
replies
995
views
edgeR analysis of cells treated with either drug1, drug2, or a time matched control at two different time points, did I set this up correctly?
edger rnaseq gene expression bioinformatics
updated 5.7 years ago by 50k • written 5.7 years ago by • 0
0
votes
4
replies
1.1k
views
GOexpress - Error when plotting expression data
RNA-seq transcriptomics gene ontology gene expression GOexpress
updated 4.3 years ago by ▴ 350 • written 4.3 years ago by • 0
2
votes
4
replies
4.6k
views
WGCNA: intrepreting grey unassigned "module"?
WGCNA rnaseq gene expression co-expression network
updated 6.1 years ago by ★ 3.0k • written 6.1 years ago by ▴ 10
0
votes
4
replies
1.3k
views
Gene clusters based on gene expression across samples
kmeans gene expression clustering
6.6 years ago Jane Merlevede ▴ 90
0
votes
3
replies
1.9k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression
updated 5.4 years ago by 0 • written 7.8 years ago by ▴ 70
0
votes
3
replies
1.4k
views
Anova test on gene expression data
Anova gene expression
updated 6.5 years ago by 66k • written 6.5 years ago by • 0
1
vote
3
replies
2.4k
views
Reading Illumina HT12 V4.0 Data from GEO into Lumi
lumi geoquery geo illumina human ht-12 v4 gene expression
updated 6.6 years ago by 50k • written 6.6 years ago by • 0
3
votes
3
replies
1.9k
views
Differential Expression Analysis in edgeR using Anova
edger anova gene expression Dispersion
updated 4.9 years ago by • 0 • written 5.4 years ago by • 0
2
votes
3
replies
988
views
How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 5.3 years ago by 42k • written 5.3 years ago by ▴ 30
1
vote
3
replies
1.7k
views
RPM data analysis with DESeq2
deseq2 RPM gene expression
5.1 years ago ruhollah.mb • 0
0
votes
3
replies
1.2k
views
How to regress phenotype ~ gene + covars in limma?
limma gene expression microarray R
updated 5.1 years ago by 50k • written 5.1 years ago by • 0
0
votes
2
replies
846
views
Is there any bioc tool to predict/quantify transcription factor activation using gene expression data?
transcription factor tf activation gene regulatory network gene expression
updated 7.4 years ago by • 0 • written 7.4 years ago by • 0
2
votes
2
replies
847
views
Limma design matrix separate channel analysis with same control
limma design matrix gene expression
updated 5.3 years ago by 50k • written 5.3 years ago by • 0
1
vote
2
replies
653
views
Microarray Analysis of Sleep Deprivation Data Experimental Design
limma gene expression r diffeential expression microarray analysis
updated 5.3 years ago by 66k • written 5.3 years ago by • 0
0
votes
2
replies
1.0k
views
Question about Illuminaio
illuminaio illumina human ht-12 v4 gene expression micorarray
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by • 0
2
votes
2
replies
1.4k
views
SAM/siggenes: Differential gene expression analysis
SAM siggenes microarray gene expression sam
7.4 years ago Brian Smith ▴ 120
0
votes
2
replies
889
views
NanoStringDiff correction for variation between patient
NanoStringDiff GLM Gene expression
updated 4.8 years ago by 66k • written 4.8 years ago by • 0
0
votes
2
replies
1.2k
views
Help needed to identify common genes among datasets
datasets genes gene expression
updated 8.7 years ago by ★ 13k • written 8.7 years ago by • 0
0
votes
2
replies
1.1k
views
DESeq2 # of up-and down-regulated genes are approximately equal
deseq2 gene expression
updated 3.7 years ago by 42k • written 3.7 years ago by • 0
0
votes
2
replies
1.7k
views
How can I compare the expression of two genes within the same sample?
gene expression rnaseq deseq2
updated 5.4 years ago by ▴ 30 • written 5.4 years ago by • 0
0
votes
2
replies
3.0k
views
barplot with ggplot2 for gene expression
ggplot2 barplot gene expression gene expression
updated 8.8 years ago by 66k • written 8.8 years ago by ▴ 130
2
votes
1
reply
4.8k
views
Using DESeq2 to analyse TCGA data
deseq2 tcga tcgabiolinks gene expression differential expression
updated 6.3 years ago by 42k • written 6.3 years ago by • 0
1
vote
1
reply
6.3k
views
WGCNA: Different Detect Cut Heights Across Multiple Blocks
wgcna clustering gene expression
updated 7.1 years ago by ★ 3.0k • written 7.1 years ago by ▴ 10
0
votes
1
reply
755
views
Obtaining gene expression value for a list of genes
gene expression
updated 5.8 years ago by 50k • written 5.8 years ago by ▴ 20
2
votes
1
reply
1.0k
views
gene expression data analysis and batch effect methods
batch effect gene expression
updated 7.0 years ago by ▴ 420 • written 7.0 years ago by • 0
1
vote
0
replies
881
views
Job: Bioinformatics PhD: The circadian clock in the ageing plant, University of York, UK
transcriptomics gene expression time series plant biology circadian Job
4.6 years ago dezer ▴ 10
0
votes
0
replies
697
views
problem with DeMAND, gene expression matrix input
DeMAND gene expression
5.5 years ago chipolino • 0
0
votes
0
replies
909
views
Job: Postdoctoral Research Fellowship- reinforcement learning in biology- London
job bioinformatician job machine learning gene expression experimental design Job
5.7 years ago dezer ▴ 10
0
votes
0
replies
1.1k
views
Bach effect and PEER/RUV correction on large population
methylation gene expression sva batch effect ruv
7.4 years ago carleshf ▴ 10
0
votes
0
replies
1.3k
views
What is the recommended method for running WGCNA on large metatranscriptomic dataset?
wgcna transcriptome big data metagenomics gene expression
6.3 years ago jol.espinoz ▴ 40
0
votes
0
replies
998
views
gene expression data analysis and batch effect methods
batch effect gene expression
7.0 years ago tati6406 • 0
0
votes
0
replies
1.1k
views
Interpreting Affymetrix Human Genome U133 Plus 2.0 samples
gene expression gene expression data cel affy affymatrix
6.3 years ago torgeirous • 0
0
votes
0
replies
878
views
Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
4.5 years ago astridite • 0
39 results • Page 1 of 1
Recent ...
Replies
Comment: Error in gseDO function by Javier • 0
Thank you for your answer! The thing is I'm working with 12 genes (I did also some targeted cholesterol efflux-related genes, but for sha…
Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by Ali Osman • 0
Thanks for your response and suggestions @atpoint ! I think implementation of the function is not a problem (I already have some options an…
Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU by Marek Gierlinski ▴ 30
Two years on and the issue is still there. Thank you Arthur for the solution!
Comment: Cannot install oligo on Fedora by mbassal • 0
so whats the solution for this error?
Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k
I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…
Votes
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
A: DiffBind Batch Effect
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